PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG464600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 22475.4 Da PI: 6.3919 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.6e-09 | 127 | 166 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + RR+riNs++ L+el+P+ kK++ +++L +Av+Y+k L Pavir.3KG464600.2.p 127 QMRRERINSRLRILQELIPNG-----KKVDISTMLDEAVQYVKFL 166 78*****************98.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.383 | 117 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-12 | 122 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-7 | 123 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-11 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-6 | 127 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.13E-9 | 129 | 171 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MEAECTSYWR SVDAISEESE MIEHLQSLLW SSNDVNLVPG LCSSNVPYSL PGGSPFCIND 60 NENSALVRSP PYVDVETLAS THGEKVGSKR KGETHKENHG VKGHAAPLEP GGCKKSKASS 120 QSCYAKQMRR ERINSRLRIL QELIPNGKKV DISTMLDEAV QYVKFLHMQI KLLSSDELWM 180 YSPLAYDSVN MGMHLNSSSV QE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG464600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809609.1 | 1e-117 | transcription factor bHLH84-like | ||||
TrEMBL | A0A2S3HE59 | 1e-116 | A0A2S3HE59_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EHD8 | 1e-116 | A0A2T7EHD8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca02388.1.p | 1e-143 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 4e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG464600.2.p |