PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG430200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 982aa    MW: 110508 Da    PI: 4.7547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG430200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-13853248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Pavir.3KG430200.1.p  8 GVWKNTEDEILKVAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                         78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Pavir.3KG430200.1.p  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                          68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.44253IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-17556IPR009057Homeodomain-like
SMARTSM007173.5E-14655IPR001005SANT/Myb domain
CDDcd001671.91E-111053No hitNo description
PfamPF139211.5E-121070No hitNo description
SuperFamilySSF466896.47E-2133108IPR009057Homeodomain-like
PROSITE profilePS5129421.05354107IPR017930Myb domain
CDDcd116591.70E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.4E-1457104IPR009057Homeodomain-like
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118312.0E-57406657IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 982 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKV AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKQPP PGFYDIVGED RPVEHVQFPT  240
TIDELEGKRR ADIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP  300
QISDHELEEI AKMGNAGDPG LTEELGEGSI ATRTLLGSYS QTPKLGMTPL RTPQRTPAGK  360
GDAIMMEAEN LARLRESQTP LLGGDNPDLH PSDFSGVTPR KLEMQTPNPM ATPLASPGPG  420
VTPRIGMTPS RDGHNFSLTP KGTPFRDELR INEAVEMQDG TKLELRRQDE LRRSLRSGFA  480
SFSQPKNEYQ IVMPSITEDE NEEAEEKIEE DMSDRLSREK AEEEARQEAL LRKRSKVLQR  540
SLPRPPAASV EIIRQSVIRS GESRSRSTFV PPTSLEQADE LINEELLRLL EHDNAKYPLD  600
EKTQKEKKKG SKHQKNGGYL VPEIDDFEEA ELKEAGSMVE EEIQYLRVAM GHENESFEDF  660
VKAHDACQED LMFFPTNNSY GLASVSGNAD KISALQNEFE IVKKRMDDEA KKASRLEQKI  720
KLLTQGYQVR AGKLWSQGQD TFKQMNTAST ELECFQELQK QEHLAASYRV LNLTEEVNKQ  780
KALEQTLQSR YGDLLSGFQR IQGQLEEHKR QLKIQEEIEA ENRAQAEEVV AQECAEEEER  840
KSRSLEEEGQ TNIATDGEAA GSKGTTEDQM DVDNRNRDEE FVGPIPPAPD TEGDNDEVTI  900
EENTSNAQST DPATTDDGAD KTDPAKPEGQ DKADDTMAVD AGPQEEGKDE PATVGASVSE  960
GNTAVSFDQA VSNEDNGMAP E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027953792Cell division cycle 5-like protein
5xjc_L0.027953792Cell division cycle 5-like protein
5yzg_L0.027953792Cell division cycle 5-like protein
5z56_L0.027953792Cell division cycle 5-like protein
5z57_L0.027953792Cell division cycle 5-like protein
5z58_L0.027953792Cell division cycle 5-like protein
6ff4_L0.027953792Cell division cycle 5-like protein
6ff7_L0.027953792Cell division cycle 5-like protein
6icz_L0.027953792Cell division cycle 5-like protein
6id0_L0.027953792Cell division cycle 5-like protein
6id1_L0.027953792Cell division cycle 5-like protein
6qdv_O0.027953792Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDTRHRKRKRK
2199204RKRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.189690.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG430200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4589620.0AF458962.1 Zea mays CDC5 protein (CDC5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807045.10.0cell division cycle 5-like protein isoform X2
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A3L6T5B90.0A0A3L6T5B9_PANMI; Cell division cycle 5-like protein
STRINGSi021096m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]