PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG420000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 575aa MW: 64956.6 Da PI: 9.2181

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG420000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43	1.5e-13	43	121	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ Y+ e+GF + +s++s +g+ +++ vC +eg++++e+ + + r+gC ++++ +++d+ w +++++ HnH+l+ Pavir.3KG420000.1.p 43 LFSMYSWELGFGIHFGRSRTS-ISGRRSRQDIVCACEGRDSSEEAR---------SVRCGCAVMIRLLRKDDDSWFISRFVGAHNHPLS 121 6899***********9999.88889*******99998766.........99****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-10	43	121	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
LPAAWNYGAI ERALRDADAH GDKSNFETEV GQLFDSPQEG FELFSMYSWE LGFGIHFGRS 60 RTSISGRRSR QDIVCACEGR DSSEEARSVR CGCAVMIRLL RKDDDSWFIS RFVGAHNHPL 120 SSTCGERRQW KSHSRIDQMT RDLVQNLRAN NVQISRVCSI LGSMHGSSKY VPFSRQSIRT 180 LCGRLAQELI EGDMSKTIGL FAGMREQDPA MVIRMQLDDG RRIKSLFWCH GASRFNYSYQ 240 CPAMKSAIAI ELPTTRHRWC KWHVLKKAKE SLGGIYSKNS IFKKQLHELV DEIVSIPEFE 300 TRWAQLVEEH GLGENEFLAR AYQNRDMWAK PFFTETFCTG MTRTQRSESA NHLLKTYIPR 360 SAPMHLFVSQ YNRMIADRDA DEGKEEHATK QAHRSLRVGV PLELHAAQVY TRAMYQRFSN 420 ELFKSGKFSC ADEPEAGNYR VILLDYGPYM DHGLVEYRVL THHGFTEIPA GLLLKRWTRE 480 AKSAITSLTG ISDDGALGSG LGSDHPTEEM GSGNELASAS APPRVRSRGR PAKCRMKSPL 540 ESPGASKRKE AQPMGVRHSK RLNASSRSNV AEGKC

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

LPAAWNYGAI ERALRDADAH GDKSNFETEV GQLFDSPQEG FELFSMYSWE LGFGIHFGRS  60
RTSISGRRSR QDIVCACEGR DSSEEARSVR CGCAVMIRLL RKDDDSWFIS RFVGAHNHPL  120
SSTCGERRQW KSHSRIDQMT RDLVQNLRAN NVQISRVCSI LGSMHGSSKY VPFSRQSIRT  180
LCGRLAQELI EGDMSKTIGL FAGMREQDPA MVIRMQLDDG RRIKSLFWCH GASRFNYSYQ  240
CPAMKSAIAI ELPTTRHRWC KWHVLKKAKE SLGGIYSKNS IFKKQLHELV DEIVSIPEFE  300
TRWAQLVEEH GLGENEFLAR AYQNRDMWAK PFFTETFCTG MTRTQRSESA NHLLKTYIPR  360
SAPMHLFVSQ YNRMIADRDA DEGKEEHATK QAHRSLRVGV PLELHAAQVY TRAMYQRFSN  420
ELFKSGKFSC ADEPEAGNYR VILLDYGPYM DHGLVEYRVL THHGFTEIPA GLLLKRWTRE  480
AKSAITSLTG ISDDGALGSG LGSDHPTEEM GSGNELASAS APPRVRSRGR PAKCRMKSPL  540
ESPGASKRKE AQPMGVRHSK RLNASSRSNV AEGKC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG420000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	K4A135	1e-172	K4A135_SETIT; Uncharacterized protein
STRING	Pavir.Ca02092.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-32	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.3KG420000.1.p