PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG419900.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 342aa MW: 38614.1 Da PI: 7.7213

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG419900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00034	22	51	14	45
HHHHHHHHHHHCTSCCC...TTS-.STCHHHHH CS HLH 14 driNsafeeLrellPkaskapskK.lsKaeiLe 45 ++i ++++eLr +l ++ +++K s +++L+ Pavir.3KG419900.3.p 22 ENISERIQELRAMLASS---KKRKeRSSSQTLR 51 79************9...88888*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54001	1.67E-10	127	326	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEIEKGLAYC SEGVTTIQNW CENISERIQE LRAMLASSKK RKERSSSQTL RTPPFALDLS 60 GTSPEEDIMK GKTTHASAGG GSSSGREATS QRLYPNLKSY IVWVDVKGRL PVRLTGNQIK 120 MGILKPVELD SNIIAATVRL LSEFERNMIL HRSNGASRHY IPPEWTSYVT AGNFEAHISE 180 QYFKNSPTGY DLTTCNMLLA PVRFGQGWSC YAINVPESTL TVMDPFLKAD AGNIRIQWHQ 240 ITARKVLEEA IRCFDIVRSV DTAETTKWKV NIQLLTEVKC CTWDTGIYTM TCMRWYEPEV 300 DVSIIRLDER TAYEARKQLA HDLINMECNH AQLPHRLPTS T*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEIEKGLAYC SEGVTTIQNW CENISERIQE LRAMLASSKK RKERSSSQTL RTPPFALDLS  60
GTSPEEDIMK GKTTHASAGG GSSSGREATS QRLYPNLKSY IVWVDVKGRL PVRLTGNQIK  120
MGILKPVELD SNIIAATVRL LSEFERNMIL HRSNGASRHY IPPEWTSYVT AGNFEAHISE  180
QYFKNSPTGY DLTTCNMLLA PVRFGQGWSC YAINVPESTL TVMDPFLKAD AGNIRIQWHQ  240
ITARKVLEEA IRCFDIVRSV DTAETTKWKV NIQLLTEVKC CTWDTGIYTM TCMRWYEPEV  300
DVSIIRLDER TAYEARKQLA HDLINMECNH AQLPHRLPTS T*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG419900.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Ca02091.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.3KG419900.3.p