PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG419900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 386aa MW: 42914.5 Da PI: 6.2471 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12 | 0.0004 | 75 | 104 | 14 | 45 |
HHHHHHHHHHHCTSCCC...TTS-.STCHHHHH CS HLH 14 driNsafeeLrellPkaskapskK.lsKaeiLe 45 ++i ++++eLr +l ++ +++K s +++L+ Pavir.3KG419900.2.p 75 ENISERIQELRAMLASS---KKRKeRSSSQTLR 104 79**************9...88888*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54001 | 2.55E-10 | 172 | 370 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MERAESCSST TNPATQVGKG CIDTNVLAET TTAEALPGTS NVKEDQGSQH PDTMEIEKGL 60 AYCSEGVTTI QNWCENISER IQELRAMLAS SKKRKERSSS QTLRTPPFAL DLSGTSPEED 120 IMKGKTTHAS AGGGSSSGRE ATSQSVWVDV KGRLPVRLTG NQIKMGILKP VELDSNIIAA 180 TVRLLSEFER NMILHRSNGA SRHYIPPEWT SYVTAGNFEA HISEQYFKNS PTGYDLTTCN 240 MLLAPVRFGQ GWSCYAINVP ESTLTVMDPF LKADAGNIRI QWHQITARKV LEEAIRCFDI 300 VRSVDTAETT KWKVNIQLLT EVKCCTWDTG IYTMTCMRWY EPEVDVSIIR LDERTAYEAR 360 KQLAHDLINM ECNHAQLPHR LPTST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG419900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Pavir.Ca02091.1.p | 0.0 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG419900.2.p |