PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG419900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 395aa MW: 44075.9 Da PI: 6.5936

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG419900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00041	75	104	14	45
HHHHHHHHHHHCTSCCC...TTS-.STCHHHHH CS HLH 14 driNsafeeLrellPkaskapskK.lsKaeiLe 45 ++i ++++eLr +l ++ +++K s +++L+ Pavir.3KG419900.1.p 75 ENISERIQELRAMLASS---KKRKeRSSSQTLR 104 79************9...88888*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54001	2.55E-10	181	379	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MERAESCSST TNPATQVGKG CIDTNVLAET TTAEALPGTS NVKEDQGSQH PDTMEIEKGL 60 AYCSEGVTTI QNWCENISER IQELRAMLAS SKKRKERSSS QTLRTPPFAL DLSGTSPEED 120 IMKGKTTHAS AGGGSSSGRE ATSQRLYPNL KSYIVWVDVK GRLPVRLTGN QIKMGILKPV 180 ELDSNIIAAT VRLLSEFERN MILHRSNGAS RHYIPPEWTS YVTAGNFEAH ISEQYFKNSP 240 TGYDLTTCNM LLAPVRFGQG WSCYAINVPE STLTVMDPFL KADAGNIRIQ WHQITARKVL 300 EEAIRCFDIV RSVDTAETTK WKVNIQLLTE VKCCTWDTGI YTMTCMRWYE PEVDVSIIRL 360 DERTAYEARK QLAHDLINME CNHAQLPHRL PTST*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MERAESCSST TNPATQVGKG CIDTNVLAET TTAEALPGTS NVKEDQGSQH PDTMEIEKGL  60
AYCSEGVTTI QNWCENISER IQELRAMLAS SKKRKERSSS QTLRTPPFAL DLSGTSPEED  120
IMKGKTTHAS AGGGSSSGRE ATSQRLYPNL KSYIVWVDVK GRLPVRLTGN QIKMGILKPV  180
ELDSNIIAAT VRLLSEFERN MILHRSNGAS RHYIPPEWTS YVTAGNFEAH ISEQYFKNSP  240
TGYDLTTCNM LLAPVRFGQG WSCYAINVPE STLTVMDPFL KADAGNIRIQ WHQITARKVL  300
EEAIRCFDIV RSVDTAETTK WKVNIQLLTE VKCCTWDTGI YTMTCMRWYE PEVDVSIIRL  360
DERTAYEARK QLAHDLINME CNHAQLPHRL PTST*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG419900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Ca02091.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.3KG419900.1.p