PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG402700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 471aa    MW: 53089.1 Da    PI: 8.7511
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG402700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.4e-15117219199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+l  +d+ ++++l++p+k+ae++       ++ +  +++l+++d+sg++W ++++   ++ r++l+    +F+ +++L +gD++v+ 
  Pavir.3KG402700.1.p 117 FCKKLGVADTVAHAWLSIPRKHAEKClpqldmtQMAP--TQELVVKDLSGKEWCFQHRL-VRQMRHLLQ--ITDFATSKNLVAGDVIVIL 201
                          889999999*******************999664444..458***************64.4445799**..*****************99 PP

                          E-.SS.SEE..EEEEE-S CS
                   B3  84 ld.gr.sefelvvkvfrk 99 
                           +  r +++el+v+v+r+
  Pavir.3KG402700.1.p 202 SVpCRgQDGELRVGVRRS 219
                          666777*********985 PP
2Auxin_resp77.82.8e-26248327283
           Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          +ha++t+s F+v+Y+Pr++t +Fvv+++++++++ +++  G+Rf+m    e + e r+sG+++g++d+d   Wp+SkWr+Lk
  Pavir.3KG402700.1.p 248 SHAVTTRSKFTVLYKPRTGTEQFVVSFNQYVDSI-KSCHTGTRFRMISSREAATEDRVSGIISGIEDFDL-AWPGSKWRCLK 327
                          699*******************************.67889***************************998.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-16110207IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-20111226IPR015300DNA-binding pseudobarrel domain
CDDcd100173.72E-11116218No hitNo description
SMARTSM010197.2E-7117220IPR003340B3 DNA binding domain
PfamPF023627.4E-12117219IPR003340B3 DNA binding domain
PfamPF065078.7E-23248327IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSSAEIAPNF YDCEDLDKHV SEELWYAIAG QGVMVPQAGE LVVYFPQGHL QQSGGVSKHL  60
KDVPSQITCR LLNLELKSKK DFVYALLLLE PEPNHDFEVI NNRGLLPPMP RHPVSYFCKK  120
LGVADTVAHA WLSIPRKHAE KCLPQLDMTQ MAPTQELVVK DLSGKEWCFQ HRLVRQMRHL  180
LQITDFATSK NLVAGDVIVI LSVPCRGQDG ELRVGVRRSM RQLRNVPAPE MLNDKGSEKG  240
VSILESISHA VTTRSKFTVL YKPRTGTEQF VVSFNQYVDS IKSCHTGTRF RMISSREAAT  300
EDRVSGIISG IEDFDLAWPG SKWRCLKVKL DKNSPIETRI SPWEIELKKR SPVHILPDIE  360
TKRPRGQRGL QRDHKSKKAE ACLNKAKKVL QFYHDDAMMQ ESHSIVENKK YLSAVDDLID  420
LSIGSSVSGI SAAAHNVRKQ AQAALDIEMS NLARTFYGLK LWNTNHFEEL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-691634615353Auxin response factor 1
4ldy_B2e-691634615353Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.416630.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG402700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9TBS11e-164A0A0A9TBS1_ARUDO; ARF2
STRINGPavir.J07690.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3774322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.36e-88auxin response factor 2