PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG384600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 27780.5 Da PI: 6.1601 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.2 | 2.9e-08 | 145 | 187 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+ri ++ ++L +l+P +K++ ae+Le+A +++k Lq Pavir.3KG384600.1.p 145 TARQRRKRISEKTAKLSRLIPGG-----RKMNTAEMLEEAARHVKLLQ 187 569******************96.....7****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.836 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-9 | 141 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-10 | 142 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-9 | 143 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.25E-9 | 143 | 190 | No hit | No description |
Pfam | PF00010 | 1.0E-5 | 145 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSFFLQDVHP EVTDALLGFV YDPLDPANAA LDDLLNLPPH DDDDDAFLRP IHGDGEGKVE 60 RHCAKKQRAC GDGAWRGLAR IGTSQQSNDG CNQQVPEPPN EFVLPLPLPL PPPPHPLLPE 120 APALVRVADA NKAMGNVSQS VQSATARQRR KRISEKTAKL SRLIPGGRKM NTAEMLEEAA 180 RHVKLLQAQV GVLALMRTVG STDEKQNEKV PSMAQEQMHA LLVCGSLADA VASDSSVNSN 240 ALVSRDLGRF VASLQAGQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG384600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661333.1 | 1e-110 | uncharacterized protein LOC101765829 | ||||
TrEMBL | A0A2T7CI40 | 1e-125 | A0A2T7CI40_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca01784.1.p | 1e-161 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6201 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 1e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG384600.1.p |