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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.3KG369100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 426aa MW: 45480.6 Da PI: 6.9865 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3KG369100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 268.6 | 2e-82 | 32 | 423 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
++lLl+cA a++s+d +laq++++ l+++as++gdp+qRl++ +++AL ar r + + a ++ + ++++ + +++ l +++v+P++
Pavir.3KG369100.1.p 32 QQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPNQRLTSWLLRALVARACRLCGPAAGAPQAAAPAPRERAMSVTELAEYVDVTPWH 121
699***************************************************7777776666666665555555555556******** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfef 178
+f++ + N aIl+av+g+ +vH++D++++ G+QWp+L++ L++Rp+gpp lRiT+ ++ ++ ee+g rLa+fA++ gv++ef
Pavir.3KG369100.1.p 122 RFGFTASNGAILRAVAGSAAVHVVDLGVTRGMQWPTLIDMLSKRPGGPPALRITVPSARPAVpplLGVPDEELGARLANFAKSKGVQLEF 211
******************************************************99996666877777789******************* PP
GRAS 179 nvl......................vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
nv+ ++l+++ ++ +L+++ gEal+Vn++ + ++ + rd++L +v++l+P +v+v+++
Pavir.3KG369100.1.p 212 NVVrkgtgtstsptsspkkkqapplCQQDLASVlsDPPSLALRDGEALVVNCQSWVRHVA------QGSRDAFLGTVRELKPCLVTVTDE 295
******9999999999988888775444666556789999**************999997......445899****************** PP
GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
+ad++s+s++ r+ ++++++ lfd+l++++pr+s r+ E++ +gr+i+ vv + a+ er e+ ++ er+++ GF+ v+++e+aa
Pavir.3KG369100.1.p 296 DADLDSPSLASRIEGCFNFHWILFDALDTSAPRDSPRRVEHEAA-VGRKIEGVVGADDADGAERSESGARLAERMRRNGFTGVAFDEEAA 384
*****************************************999.********************************************* PP
GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++++ll++++ g+ v+ e++ lvl+Wk++ v + aW+
Pavir.3KG369100.1.p 385 GEVRRLLSEHA-TGWGVKREEDMLVLTWKGHGAVYTGAWT 423
***********.99*************************5 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 426 aa
Download sequence Send
to blast |
MEQELRTGGL RVRAHSSSVC FSGALIDGPR IQQLLLHCAA ALESNDVTLA QQAMWVLNNI 60
ASSQGDPNQR LTSWLLRALV ARACRLCGPA AGAPQAAAPA PRERAMSVTE LAEYVDVTPW 120
HRFGFTASNG AILRAVAGSA AVHVVDLGVT RGMQWPTLID MLSKRPGGPP ALRITVPSAR 180
PAVPPLLGVP DEELGARLAN FAKSKGVQLE FNVVRKGTGT STSPTSSPKK KQAPPLCQQD 240
LASVLSDPPS LALRDGEALV VNCQSWVRHV AQGSRDAFLG TVRELKPCLV TVTDEDADLD 300
SPSLASRIEG CFNFHWILFD ALDTSAPRDS PRRVEHEAAV GRKIEGVVGA DDADGAERSE 360
SGARLAERMR RNGFTGVAFD EEAAGEVRRL LSEHATGWGV KREEDMLVLT WKGHGAVYTG 420
AWTPS*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ727002 | 0.0 | KJ727002.1 Zea mays clone pUT3978 GRAS transcription factor (GRAS62) gene, partial cds. |
