PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.3KG359300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 220aa MW: 22754.8 Da PI: 10.9873 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.4 | 5.7e-37 | 74 | 131 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 e+ l+cprC s++tkfCy+nny+++qPr+fC+aC+ryWt+GGa+rnvPvG+grrkn+ Pavir.3KG359300.1.p 74 EARLPCPRCRSRDTKFCYFNNYNVNQPRHFCRACHRYWTAGGAIRNVPVGSGRRKNRP 131 56789**************************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.8E-30 | 76 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.463 | 77 | 131 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-25 | 77 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 79 | 115 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MQPHAEVPAS KAAAAGIKLF GKVITTQQQQ HAGAAGAAAG SAPPPRLLQQ AAASGRGGAD 60 LLQEAARARA AAAEARLPCP RCRSRDTKFC YFNNYNVNQP RHFCRACHRY WTAGGAIRNV 120 PVGSGRRKNR PVLPPPPPPP PPPAPHAGNA TPTSADHAVS ESGSPPVFTT ASGVPYRGSP 180 FHLAPSPACT AAGLPETAGQ YWWLVARAAA RAVAPDRAF* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.12761 | 2e-50 | stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after imbibition. {ECO:0000269|PubMed:11470159}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.3KG359300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727006 | 1e-115 | KJ727006.1 Zea mays clone pUT3982 C2C2-DOF transcription factor (DOF44) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809286.1 | 2e-85 | dof zinc finger protein 5-like | ||||
Swissprot | Q5JLR7 | 3e-35 | DOF5_ORYSJ; Dof zinc finger protein 5 | ||||
TrEMBL | A0A2S3HAM7 | 4e-84 | A0A2S3HAM7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6RC51 | 9e-84 | A0A3L6RC51_PANMI; Dof zinc finger protein DOF5.1-like | ||||
STRING | AC209819.3_FGP009 | 6e-60 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6495 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G29160.1 | 7e-32 | Dof family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.3KG359300.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|