PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG357500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 290aa MW: 30210 Da PI: 9.1451 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.3 | 5e-29 | 57 | 126 | 3 | 72 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++ + Pavir.3KG357500.1.p 57 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPQAQ 126 78*************************************************************8888822 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-26 | 58 | 119 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.688 | 58 | 116 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MISGNLTNEE LAARCTKAEA PAAGAGAVVA KSPAVPSSRH WPPSTESRIV RVSRVFGGKD 60 RHSKVRTVKG LRDRRVRLSV PTAIQLYDLQ DRLGLSQPSK VVDWLLDAAQ HEIDKLPPLQ 120 FPPQAQGLVA HLPPSMVAPF ANGAADRAAA AANAATGASA AMADGDKRHC HGGIKGLMGF 180 NNSVGLVNGA MPLAHGLYYT PGGEPWANGN AVHDQVSHGT SPQTVAHHSP FSSLLSLAPG 240 PQLVFYSPEG GGFAMKEAAD HQFLGNLDHS EGQLSLSSAR SFLHPGSQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 63 | 117 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 63 | 117 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.13222 | 0.0 | stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG357500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956358 | 0.0 | EU956358.1 Zea mays clone 1561243 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961521.1 | 1e-170 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_004961522.1 | 1e-170 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_012700333.1 | 1e-170 | transcription factor TCP13 isoform X1 | ||||
TrEMBL | K3Z8G3 | 1e-169 | K3Z8G3_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ca01337.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 6e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG357500.1.p |