PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG348700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-PHD
Protein Properties Length: 721aa    MW: 79288.4 Da    PI: 4.6465
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG348700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.24.4e-115676061352
                          HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
             Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                          + L e+F+ ++yps++ +e LA++lgLt +qV+ WF  rR
  Pavir.3KG348700.1.p 567 QKLHEHFKTDPYPSRSVKESLAEELGLTFQQVSKWFESRR 606
                          6799**********************************99 PP
2PHD44.73e-15211266151
                          SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ Cg+   + +++++lCdg C++ fH++Cl+++l++e++peg   wlC+ C++k
  Pavir.3KG348700.1.p 211 FCATCGSkdVTLGNDIILCDGaCDRGFHQNCLNPPLRTEDIPEGdeGWLCPACDCK 266
                          7******64445********66***********************9*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.42E-13201269IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.8E-13208265IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.208209266IPR019787Zinc finger, PHD-finger
SMARTSM002494.1E-11211264IPR001965Zinc finger, PHD-type
CDDcd155048.23E-26211263No hitNo description
PfamPF006281.9E-12211266IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590212263IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.3E-11545606IPR009057Homeodomain-like
PROSITE profilePS5007113.54552612IPR001356Homeobox domain
SMARTSM003892.6E-10554616IPR001356Homeobox domain
SuperFamilySSF466892.99E-10558610IPR009057Homeodomain-like
CDDcd000867.37E-11561606No hitNo description
PfamPF000461.7E-8567606IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MDKNTRCPVE GNGEIKHAMG SSQNPEAVEN HVMSTSQTVQ NTMGIRKNYK RAANRGKKGF  60
QELTGQTYTL RSSGNNVRML RSTSSSKTTP TEHAQAPVQP AAKIRKRGRP TNSNKSSTDE  120
FSQIRKCVRY ILNRMNYEQS LIEAYASEGW KNQSLDKIRP EKELERAKAE ILRCKLRIRE  180
VFQNLDSLLS KGKIDESLFD SEGEISCEDI FCATCGSKDV TLGNDIILCD GACDRGFHQN  240
CLNPPLRTED IPEGDEGWLC PACDCKIDCI DIINELQGSD ISIDDSWEKV FPEAAALANG  300
SKQDDAFDLP SDDSEDNDFN PNMSEEHVAS KEEGSSEEEE DEDGGSDSDN SNFLTSSDSD  360
GSGPSTMDKK KVDDLGLPSE DSEDDDYDPA GPGSDNDSDK DIQKNKSTSD ESDFTSDSDD  420
FCKEIAKSCG HDEVSSLPLP DVKVDDIERS TAQANTENSN DDPMETEMDQ SVVLPVSGRR  480
QTERLDYKKL YDEAYGEAPS DSSDDEEWSG KSTPTKDNKE SEADSPAGKS LHPDSLHGSV  540
DKKHGDLRSN GSNSATRKGH FGPVINQKLH EHFKTDPYPS RSVKESLAEE LGLTFQQVSK  600
WFESRRHFTR LASSRKGICP DNHRPENTNS PVAASTQLDK PEGTETEKPN VCRNKDATIS  660
GKVGSPKVGS RKNRGKNASG GDVRGSKVDS AEDQVPGLDL ADKARQKAIQ REMTKKKNGR  720
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.95921e-122callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in kernels, leaves and shoots but not in roots.
Functional Description ? help Back to Top
Source Description
UniProtInteracts with the shrunken (SHR) 26 bp feedback control element.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG348700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807084.10.0homeobox protein HOX1A-like isoform X1
RefseqXP_025807085.10.0homeobox protein HOX1A-like isoform X1
SwissprotP466050.0HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBLA0A2T7EBF10.0A0A2T7EBF1_9POAL; Uncharacterized protein
STRINGPavir.Ca01677.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.13e-80Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Bellmann R,Werr W
    Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element.
    EMBO J., 1992. 11(9): p. 3367-74
    [PMID:1354614]