PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG339700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 407aa MW: 45156 Da PI: 7.7854 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24 | 9.2e-08 | 157 | 220 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT+ ++e+lv+a ++ + W I+ t + +Rt+kq+k++w +y Pavir.3KG339700.1.p 157 RNEWTPADEEKLVNAWLMHSVDcvdgnsksgptFWGQISDTYNattdplRHRTAKQLKDHWSMY 220 789**********************************************************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.411 | 152 | 221 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 9.79E-6 | 154 | 223 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-6 | 156 | 219 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-5 | 156 | 223 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00785 | 159 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MQSYFDLLNA DPERSTTHMP GTNASEEEFD YSPLHRRSET APPSQPRALF PPAPGAFIGA 60 PPPYPYPSYP YPPYPYPPAP ATSRVAPPPY PYPAPTTDAP PPYPYPPYPY PPYPYPPPPT 120 FTTSAPHGHA GGAASAGSEN EGGGTTAPCR PAIPKKRNEW TPADEEKLVN AWLMHSVDCV 180 DGNSKSGPTF WGQISDTYNA TTDPLRHRTA KQLKDHWSMY NARVSLFNAI YNQEVSKRQS 240 GADDDMVMDE AKARYARRAG HEFKLFHWWE AVRHQPKWSV KHGGGPNIDV SKRSRLGTSG 300 EYSSGSRETD EEVNRPPGRD RSKAAARKGK GKVGSSSHTS TDSAEMGEKL EDLCKITHEY 360 AQAKLWKQWN ILSSRSTDGM TDAQKKVHDR ALKRLQQQLH LNDDDE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG339700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008670977.1 | 6e-87 | ribonuclease 3 | ||||
TrEMBL | K7UAL2 | 2e-85 | K7UAL2_MAIZE; Putative MYB DNA-binding domain superfamily protein | ||||
STRING | Pavir.J22374.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3263 | 3 | 37 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG339700.1.p |