PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG334800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 255aa MW: 27964.5 Da PI: 4.9853 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 102 | 127 | 3 | 26 |
S---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG...tCkyGdrCkFaHg 26 e+C++f+r C++G+ C+FaHg Pavir.3KG334800.1.p 102 GEPCPDFRR-RpgaACPRGSACPFAHG 127 589****99.558*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.164 | 99 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.014 | 99 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 100 | 131 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-5 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 134 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 25 | 137 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVSREHSHSY EDLVLDPAAL EIIPPQLLAA LGEYLSAGRG GDGDAAEAEA EAEAEADDEF 60 MMYEFKVRRC ARARSHDWTA CPYAHPGEAA RRRDPRRVAY AGEPCPDFRR RPGAACPRGS 120 ACPFAHGTFE LWLHPSRYRT RPCRAGAACR RRVCFFAHAA AELRAAPKDD SLSLSPKSTL 180 ASLWESPPVS PVEGRMRWLD AIDEPSDADA EVEELMLAMR ELSFRKAAAS SAPVLPPVME 240 EDGPDLGWVS ELVM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4479 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG334800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067691 | 0.0 | BT067691.1 Zea mays full-length cDNA clone ZM_BFc0130E04 mRNA, complete cds. | |||
GenBank | EU953602 | 0.0 | EU953602.1 Zea mays clone 1437892 CCCH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303637.1 | 1e-144 | zinc finger CCCH domain-containing protein 37-like | ||||
Swissprot | Q65X92 | 1e-127 | C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A1Z5R4P2 | 1e-142 | A0A1Z5R4P2_SORBI; Uncharacterized protein | ||||
STRING | Si022958m | 1e-134 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11209 | 19 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 5e-36 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG334800.1.p |
Publications ? help Back to Top | |||
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