PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG320900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 441aa MW: 49546.2 Da PI: 9.9753 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.7e-07 | 132 | 174 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W+ eE ++l ++++++ + + Ia ++++ R+ +++ksr+++ Pavir.3KG320900.1.p 132 AWSREETDQLFELCERFDLR-FIVIADRFPTSRSVEDLKSRYYS 174 7*******************.*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16282 | 4.9E-31 | 105 | 179 | IPR032563 | DAMP1, SANT/Myb-like domain |
SuperFamily | SSF46689 | 5.46E-6 | 129 | 183 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-7 | 129 | 178 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-5 | 132 | 177 | IPR009057 | Homeodomain-like |
CDD | cd11658 | 1.82E-18 | 133 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MDAKDILGLP KTPFSSSQEK KSRPPKEPQR KPDGVSREVY ALTGGVGMAP LMPTIEASHL 60 KRRPAAEKEK VAWQWLPFTS SARTDNLQLY HWVRVVNGVP PTGDYQFAKY NKKVDILKYT 120 DEEYEKYLID PAWSREETDQ LFELCERFDL RFIVIADRFP TSRSVEDLKS RYYSVSRTLL 180 IHRARSFDDV SGNPLVKDSY DAAHDTERKR ALSALLSQTK QQERKDAETL AEAKRIMESR 240 AASKTVDEAG MPSSSYNAMV PVDGVSPLSS THPPLTHPNT AANSSIPNSL RALRVYLRTH 300 ALDQMVQAAS ASAGLRVIKR VDQTLQDLGV NLKPKAPTKA VCVEHLELQY EILTLLNLQK 360 QLQNKEAEVL ANRESSFTEA PSTPKRSNRD IDRPFVPDTV GFTGERAGKR DHKRKNTGRF 420 IDPPPSPPQS KRPRKLKGSD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3hm5_A | 6e-20 | 104 | 179 | 4 | 83 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 6e-20 | 104 | 179 | 4 | 83 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.14300 | 9e-57 | callus| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG320900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968439 | 0.0 | EU968439.1 Zea mays clone 320860 DNA methyltransferase 1-associated protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805626.1 | 0.0 | SWR1-complex protein 4 | ||||
Swissprot | Q8VZL6 | 0.0 | SWC4_ARATH; SWR1-complex protein 4 | ||||
TrEMBL | A0A2S3HA29 | 0.0 | A0A2S3HA29_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EB13 | 0.0 | A0A2T7EB13_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca01768.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6153 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47210.1 | 1e-173 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG320900.1.p |
Publications ? help Back to Top | |||
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