PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG318100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 33262.9 Da PI: 4.9614 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ + ++G g+W+++++ g+ R++k+c++rw +yl Pavir.3KG318100.1.p 16 KGLWSPEEDEKLYNHIIRHGVGCWSSVPKLAGLQRCGKSCRLRWINYL 63 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.5e-16 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l++ +++ lG++ W+ Ia++++ gRt++++k++w++ Pavir.3KG318100.1.p 69 RGSFSQQEEDLILALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 113 899*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 11 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.622 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.69E-12 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.944 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-26 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-15 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.61E-12 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGRLSCGGGV QPKLRKGLWS PEEDEKLYNH IIRHGVGCWS SVPKLAGLQR CGKSCRLRWI 60 NYLRPDLKRG SFSQQEEDLI LALHEILGNR WSQIASHLPG RTDNEIKNFW NSCLKKKLRQ 120 RGIDPSTHKP IAGAGAGAVD HDRKPAAGDS DEGLAQKQPA VFDPFPLADF GFDLGAAGVA 180 ALYCGPYDDG VGKASPDAGW FVADYSSVLD VSENLGYGES SSNSSNWTCA EMSSAVLDSE 240 VLHWASGGGA AKPEPYTELE QQQRSGGYGG GEQAVDDDDD ALEHKFSLPC GQEQSLAHFD 300 FNLEYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 12 | 118 | 3 | 108 | B-MYB |
1h8a_C | 1e-28 | 10 | 118 | 21 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | LKKKLRQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG318100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679420 | 0.0 | HF679420.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB14 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807707.1 | 0.0 | myb-related protein Hv33-like | ||||
Swissprot | P20027 | 1e-119 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A3L6SV81 | 0.0 | A0A3L6SV81_PANMI; Myb-related protein Hv33-like | ||||
STRING | Pavir.Ca01788.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-75 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG318100.1.p |