PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG317900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 267aa MW: 28511.5 Da PI: 7.6427

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG317900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.4e-07	140	181	9	55
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+RR+ri ++ +eL +l+P K++ a +Le+A +++k Lq Pavir.3KG317900.1.p 140 ARQRRKRISEKTAELSRLIPGgH------KMNTAKMLEEAARHVKLLQ 181 69****************955......**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.788	131	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-8	137	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-10	137	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-8	138	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.86E-8	139	184	No hit	No description
Pfam	PF00010	5.5E-5	140	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MSFLQDVHPE VTDALLGFVY DPLDPANAAL DDLLSLPPHD DDDAFLRPIH GDGDGKVERH 60 CAKRQRTCGD GAWRGLARIG AGQQSNGGGN QQVPEPPNEL VLPLPLLPPP QLPEPPALVR 120 VADANKAAGN VSQPVQSTAA RQRRKRISEK TAELSRLIPG GHKMNTAKML EEAARHVKLL 180 QAQVGVLALM RTVGSTDENE KVPSMAQEQM HALLVRGSVQ ERLAAEGKCL VPRKLVDAVA 240 SDSSVKSNAL VSRDLGRFVA SLLAGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG317900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661333.1	1e-130	uncharacterized protein LOC101765829
TrEMBL	A0A2T7CI40	1e-149	A0A2T7CI40_9POAL; Uncharacterized protein
STRING	Pavir.J05526.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6201	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	1e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG317900.1.p