PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG311700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 596aa    MW: 63814.9 Da    PI: 9.2812
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG311700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.31.2e-21457519163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkre+rkq+NRe+ArrsR+RK+ e+eeL++ v++L+aeN++L++e+ +l++ +++l+ e+
  Pavir.3KG311700.1.p 457 ERELKREKRKQSNRESARRSRLRKQVETEELATQVESLTAENTSLRSEIGRLTESSEQLRLEN 519
                          89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.6E-27217308IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1707.8E-18452516No hitNo description
PfamPF001704.8E-20457519IPR004827Basic-leucine zipper domain
SMARTSM003382.0E-22457521IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.059459522IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.19E-11460516No hitNo description
CDDcd147021.64E-21462510No hitNo description
PROSITE patternPS000360464479IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MGEECTKQRD ALVQCDQPTW DHPSASQRRP TCGPGGTWTP QPEWVLEIVF DPGGGARTGC  60
GHHVTHMTGM LSRPPGHAVR RRVGRRDGRH VSAGGTTDGG VTRNKQMGPV YLHPAHPPLA  120
ASPISTDNPM HTWEILWHPS PRPLPPPSPL ATAPLPRRLS LAHHLPLPRS PSLTFSLHTH  180
LLIGSIGLRV PSDPWSARCR AESSPDLARL ADICEVMAHD EAVATQKTGN TASSPKDQPA  240
PSPYPDWSSM QAYYGPGVLP PTYFAPAIAP GHPPPYMWGP QPLMPHPFGT PYAAMYAHGT  300
AYPHPLVPMV SNPLSVEPTK SANSKEKSSN KKLKEIDRTA VSAGSGNSKR AMSSSEDYSA  360
EGSSDVNDQK VNKTSRKLSS VDGPASAAAR IEGVIAPNHT LANTAILPHH CFPAPVVKTS  420
TTNVANSRAM GGSISPYPGV IVPPHTGGPA DLSIKDEREL KREKRKQSNR ESARRSRLRK  480
QVETEELATQ VESLTAENTS LRSEIGRLTE SSEQLRLENS ALMVKLKDPE VPAPAEPSPK  540
ATASSPSPRP TAENFLSMID GTTSAPGASR HTEHGKPKLR QLLDSNPSTD VAAIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1473479RRSRLRK
2473480RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.169380.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG311700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807251.10.0common plant regulatory factor 1-like isoform X1
TrEMBLA0A2S3H9G50.0A0A2S3H9G5_9POAL; Uncharacterized protein
TrEMBLA0A2T7EA650.0A0A2T7EA65_9POAL; Uncharacterized protein
STRINGPavir.Ca00968.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.23e-41G-box binding factor 3