PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG287700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 272aa    MW: 29564.7 Da    PI: 8.1636
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG287700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-081401781255
                          HHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          RR+ri +++ eL +l+P         K++ ae+Le+A ++Ik Lq
  Pavir.3KG287700.1.p 140 RRKRISEKMVELSRLIPDgH------KMNTAEMLEEAARHIKLLQ 178
                          9****************955......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.664128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-7136183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-8140181No hitNo description
Gene3DG3DSA:4.10.280.105.4E-8140185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5140178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-10140193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MFSCEESRFG GRRREIEARG DDGAGARAPL GPGRKEEEER IDEWVTDALL GFVYAPTNAA  60
LDNLLNLPPH DDGGAFHKPI HGDSNGKVER HCAKRQRACG DGAALRTSAP ASKAIAEAIS  120
GAHRGHEEGH GQCVPVRAER RKRISEKMVE LSRLIPDGHK MNTAEMLEEA ARHIKLLQVQ  180
VGVLALMRTD ENEKMPSMVQ EQMHTLLVRG SVQERLAAEG KCMVPRKLVG AVASDSSVKS  240
NALVSRDLGW FVGGSVGRIW RLLVAACSYS F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG287700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432433e-55AC243243.1 Panicum virgatum clone PV_ABa051-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465928.13e-56uncharacterized protein LOC8061437
TrEMBLA0A2T7CI407e-84A0A2T7CI40_9POAL; Uncharacterized protein
STRINGPavir.J05526.1.p1e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-19bHLH family protein