PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG287300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 267aa    MW: 28518.5 Da    PI: 7.5627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG287300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.5e-09135181455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          a +++ r+RR+ri ++ +eL +l+P       +K++ ae+Le+A +++k Lq
  Pavir.3KG287300.1.p 135 AQSAAARQRRKRISEKTAELSRLIPGG-----RKMNTAEMLEEAARHVKLLQ 181
                          567889*******************96.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.535131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-10133186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.52E-10133184No hitNo description
SuperFamilySSF474595.89E-11135188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6135181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSFLQDVHPE VTDALLGFVY DPLDPANAAL DDLLSLPPHD DDDAFLRPIH GDGVGKVERH  60
CAKRQRACGD GAWRGLSRIG AGQQSNGGGN QQVPEPPNEL VLPLPLPPPP QLPEPPALVR  120
VADANKAAGN VSQSAQSAAA RQRRKRISEK TAELSRLIPG GRKMNTAEML EEAARHVKLL  180
QAQVGVLALM RTVGSTDENE KVPSMVQEQM YALLVRGSMQ ERLAAEGKCL VPRKLVDAVA  240
SDSSVKSNAL VSRDLGRFVA SLQAGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG287300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661333.11e-128uncharacterized protein LOC101765829
TrEMBLA0A2T7CI401e-148A0A2T7CI40_9POAL; Uncharacterized protein
STRINGPavir.Ca01783.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.15e-20bHLH family protein