PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG287200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 277aa    MW: 29428.2 Da    PI: 8.1212
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG287200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-08143185855
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+ri ++ +eL +l+P       +K++ ae+Le+A +++k Lq
  Pavir.3KG287200.1.p 143 TARQRRKRISEKTAELSRLIPGG-----RKMNTAEMLEEAARHVKLLQ 185
                          569******************96.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.109135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-9139191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-10139192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-9141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.85E-9141188No hitNo description
PfamPF000105.8E-6143185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSFFLQDVHP EVTDALLGFV YDPLDPANAA LDDLLNLPPH DDDDDAFLRP IHGDGEGKVE  60
RHCAKRQRAC SDGAWRGLAR IGTSQQSNGG GNQQVPEPPN EFVLPLPLPP PPHPLLPEAP  120
ELVRVADANK ATGNVSQSVQ SATARQRRKR ISEKTAELSR LIPGGRKMNT AEMLEEAARH  180
VKLLQAQVGV LALMRTVGST DEKQNEKVRA IHGAGANARA AGVRQRAGAA GRGGQVPACL  240
VPRKLVDAVA SDNSVNSNAL VSRDLGRFVA SLQAGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG287200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661333.11e-110uncharacterized protein LOC101765829
TrEMBLA0A2T7CI401e-124A0A2T7CI40_9POAL; Uncharacterized protein
STRINGPavir.Ca01784.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-15bHLH family protein