PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG270300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 623aa    MW: 69275.4 Da    PI: 6.7649
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG270300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.2e-13521341098
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                             ++++++p +  +++ ++  +s t++++ ++g  +++ +  ++  g++vl++GW  F  a++L+e+D++vFk+ g+s+f  +v++++
  Pavir.3KG270300.1.p  52 EDFRSCMRIPPDVGSHFRKI--SSETIKINAPNGCLYDIGV--SREMGEIVLRSGWDVFSAAHNLEENDSLVFKFCGNSTF--KVQIYS 134
                          444555******99777756..6779***************..*********************************99999..887765 PP
2B3413.5e-132263061195
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           k + +++p   + ++  +++ + t++le ++++ ++v    +++++++ l++GW  Fv a++++egD ++F+++g+s+    v 
  Pavir.3KG270300.1.p 226 VKGCYISIPSILL-KNVTEEAFKATVKLEAPDSKIYSVSA-AQQSDDEIALQSGWDAFVVAHRVQEGDLIIFRYKGSSRL--EVF 306
                          46688999*9999.5545678889****************.4666667**************************997666..444 PP
3B343.27e-14468559799
                          .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                   B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                          +s  +k+ ++++  ++a+++     +++ tl+le   g++W+  l    ++g++ +++GW eFv +n L  gD+++F+l++  ++ ++ v
  Pavir.3KG270300.1.p 468 TSTGGKNFLMRFATEYARRClP-LATQDLTLQLEGCPGKQWDTVL--HVQGGHVKISGGWAEFVTDNCLWPGDICMFELVKItRRLKMIV 554
                          6778888999999999999964.446889****************..99999***************************98889999999 PP

                          EEE-S CS
                   B3  95 kvfrk 99 
                          +++rk
  Pavir.3KG270300.1.p 555 HLIRK 559
                          99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.13843136IPR003340B3 DNA binding domain
SMARTSM010192.4E-646136IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-1446135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-1547135IPR015300DNA-binding pseudobarrel domain
CDDcd100176.77E-1351134No hitNo description
PfamPF023622.1E-1154134IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-18204319IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-16210316IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-12213309No hitNo description
SMARTSM010190.016215311IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096216311IPR003340B3 DNA binding domain
PfamPF023622.0E-10223305IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-17454559IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-15454557IPR015300DNA-binding pseudobarrel domain
CDDcd100172.75E-14459558No hitNo description
SMARTSM010199.3E-5461560IPR003340B3 DNA binding domain
PROSITE profilePS5086311.053462560IPR003340B3 DNA binding domain
PfamPF023621.9E-12467559IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MGSTCECSLR CPDHHYKNCM GNEELQLHDV TDEDFRDCIG NKKTRFHVVA DEDFRSCMRI  60
PPDVGSHFRK ISSETIKINA PNGCLYDIGV SREMGEIVLR SGWDVFSAAH NLEENDSLVF  120
KFCGNSTFKV QIYSSHGGSQ KITSCVSPPS EILEAVLPST CDHHASKGNE VPYPRHDQET  180
AEFDYLTSGG SCLTKAQDEK VLEMAHTYRS QVPLCVAVMK RTNVDVKGCY ISIPSILLKN  240
VTEEAFKATV KLEAPDSKIY SVSAAQQSDD EIALQSGWDA FVVAHRVQEG DLIIFRYKGS  300
SRLEVFILDQ NGCQKSSSCF GKGYVSNAQE ICDDSVKIID PPHTTVDIID LSSSSSDNDD  360
NVAAYTEKSA RLQKRYFDRC AKTRRMDSTS SQSCTLGHDH EDLQAYMVDG VNRSRSPLNS  420
NYYVVPSLPL YIISRKTTLS AAQEKMVLEK VQAIGSKFPI FVSVMNRTST GGKNFLMRFA  480
TEYARRCLPL ATQDLTLQLE GCPGKQWDTV LHVQGGHVKI SGGWAEFVTD NCLWPGDICM  540
FELVKITRRL KMIVHLIRKW GVSSRSRDDA DVAGPQQGVR DRRRSSRITG NGCASDVMCA  600
RPLCVRGGMG DKSRREGEEE LM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG270300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439346.10.0B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A1E5W3P10.0A0A1E5W3P1_9POAL; Uncharacterized protein
STRINGPavir.J03783.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16378713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-16B3 family protein