PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG257500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 414aa MW: 46254.7 Da PI: 7.1318

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG257500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	9.2e-34	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl Pavir.3KG257500.1.p 44 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.387	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-32	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.6E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-23	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	7.8E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-22	145	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MYHQHQGPSE LFTTRTSFPM EQHLFLRGGN AQGDSGLVLS TDAKPRLKWT PELHQRFVDA 60 VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQAQANVST SKNAIGCATI 120 ADRMPGTSAP TMSSTNVIPQ AEKTIQIGEA LQMQIEVQRQ LNEQLEVQRH LQLRIEAQGK 180 YLQAVLEQAQ ETLGKQNLGP ANLEDAKIKI SELVSQVSNE RFSNAITDIK ESSSVHRLEP 240 KQIQFVDSCW KSNYLTAAEG FIKEHRLQHH GVLRAYDDSS LFCRKGSHEH ENQIALNRSL 300 SERRMAHLQN EKGYNKAEFG YESDTEMAPE YITPQKNGGG STTSSASGSK GDTGKTYLEE 360 PNCTRQSVEY PSESKLLDFE HSCPGKKLDL NTHNVDDADQ AYRHFDLNGF SWS*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MYHQHQGPSE LFTTRTSFPM EQHLFLRGGN AQGDSGLVLS TDAKPRLKWT PELHQRFVDA  60
VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQAQANVST SKNAIGCATI  120
ADRMPGTSAP TMSSTNVIPQ AEKTIQIGEA LQMQIEVQRQ LNEQLEVQRH LQLRIEAQGK  180
YLQAVLEQAQ ETLGKQNLGP ANLEDAKIKI SELVSQVSNE RFSNAITDIK ESSSVHRLEP  240
KQIQFVDSCW KSNYLTAAEG FIKEHRLQHH GVLRAYDDSS LFCRKGSHEH ENQIALNRSL  300
SERRMAHLQN EKGYNKAEFG YESDTEMAPE YITPQKNGGG STTSSASGSK GDTGKTYLEE  360
PNCTRQSVEY PSESKLLDFE HSCPGKKLDL NTHNVDDADQ AYRHFDLNGF SWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.16845	0.0	leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG257500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805060.1	0.0	myb-related protein 2-like
Refseq	XP_025805061.1	0.0	myb-related protein 2-like
TrEMBL	A0A2T7ECA8	0.0	A0A2T7ECA8_9POAL; Uncharacterized protein
STRING	Pavir.J03485.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12279	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	8e-97	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG257500.1.p