PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG251300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 306aa MW: 32764.2 Da PI: 5.8498 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.9 | 5.5e-29 | 45 | 98 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rl+Wt +LH+rF av+qLGG++kAtPk++l++m v+gLtl+h+kSHLQkYRl Pavir.3KG251300.1.p 45 ARLKWTRDLHDRFGLAVAQLGGADKATPKSVLRAMAVPGLTLYHLKSHLQKYRL 98 7****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-29 | 42 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-14 | 44 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-21 | 45 | 99 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 3.1E-14 | 158 | 197 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MLATPPTLLL RYGHTERRGG AVVGTLEMAS SCGGAQQQQG GEARARLKWT RDLHDRFGLA 60 VAQLGGADKA TPKSVLRAMA VPGLTLYHLK SHLQKYRLAV SRDLVTTPPG EGSNDRWSSS 120 SESQPDEHDE DAAAEWRGAF AASSTEEAPC DPPRSMARMQ REVQRKLQVQ IEVQRHLQLR 180 IEAQGRYLQS VLRRAEEVLA DHAVGSPELS ELASAVESGC LSSSSSLSPS PPRHRSAGSC 240 VTSSSSEGER QAGAGSKRPC TCAAAEQPVQ GSKRTFLQSH EEGEADADED AEAEDGSSPE 300 IDLNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-16 | 44 | 99 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-16 | 44 | 99 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-16 | 44 | 99 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-16 | 44 | 99 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.16446 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG251300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822647.1 | 1e-127 | myb family transcription factor PHL8-like | ||||
Swissprot | F4I274 | 2e-44 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A3L6PR01 | 1e-136 | A0A3L6PR01_PANMI; Myb family transcription factor APL-like | ||||
STRING | Pavir.J03046.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11264 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 7e-46 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG251300.1.p |
Publications ? help Back to Top | |||
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