PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG243500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 20869.9 Da PI: 6.7041 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.1 | 3.5e-44 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGasnv k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql Pavir.3KG243500.1.p 6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNVAKMLQELPVQQRGDAVSSLVYEANARMRDPVYGCVGAISFLQNQVSQL 95 7***************************************************************************************** PP DUF260 91 kaelallkee 100 + +la++++e Pavir.3KG243500.1.p 96 QMQLAVAQAE 105 *****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.436 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-43 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene3D | G3DSA:3.20.20.110 | 2.3E-5 | 81 | 159 | IPR000685 | Ribulose bisphosphate carboxylase, large subunit, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0000287 | Molecular Function | magnesium ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MGGGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGASNVAKM LQELPVQQRG 60 DAVSSLVYEA NARMRDPVYG CVGAISFLQN QVSQLQMQLA VAQAEILCIQ MQQRPDGPGD 120 VDAVVAAGGG GAGDHHHHHA MAAAMQQHQA AMVAPDDVDA FLMQNAGAGA MVPPQLMGYG 180 AASAGGMGEP LKRESLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-47 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-47 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG243500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100852 | 2e-95 | FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963862.1 | 1e-116 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 3e-70 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | K3ZCF4 | 1e-115 | K3ZCF4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ca01985.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 8e-72 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG243500.1.p |
Publications ? help Back to Top | |||
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