PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG239900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 546aa MW: 59011.3 Da PI: 7.7909 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.3 | 3.6e-10 | 102 | 127 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+ ++G C++G +CkF+H+ Pavir.3KG239900.1.p 102 PGEPDCSFYVKFGSCRFGIKCKFNHP 127 5789*********************8 PP | |||||||
2 | zf-CCCH | 26 | 1.6e-08 | 253 | 275 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G Ck+ H Pavir.3KG239900.1.p 253 QEECKYYSTPGGCKFGTACKYLH 275 589******************** PP | |||||||
3 | zf-CCCH | 33.2 | 8.6e-11 | 300 | 324 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++rtG Ck+ +CkF+H+ Pavir.3KG239900.1.p 300 GEKECPFYMRTGSCKFATNCKFHHP 324 7899********************9 PP | |||||||
4 | zf-CCCH | 22.5 | 1.9e-07 | 448 | 474 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Cky +C+F+H++ Pavir.3KG239900.1.p 448 PGQPECQHFVKSGFCKYRMKCRFHHPR 474 5789*********************96 PP | |||||||
5 | zf-CCCH | 24.5 | 4.6e-08 | 494 | 519 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G CkyG+ C F+H++ Pavir.3KG239900.1.p 494 DQPVCTYYGRFGVCKYGPACMFNHPF 519 6899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.3E-4 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.427 | 101 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-7 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.962 | 250 | 278 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-4 | 251 | 277 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-6 | 254 | 275 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 256 | 277 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 298 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 298 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-7 | 300 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-5 | 301 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 304 | 323 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 447 | 474 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.826 | 447 | 475 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.967 | 492 | 520 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0057 | 492 | 519 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-5 | 493 | 519 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 494 | 519 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MADADANTQP PDAAASPIAS ISPSSVGAAD ADADAIEKQL AGLGIAVAGG GGFPGPSGWD 60 DVPVPVPVAV GGGDEVAAEK VRGPPPAPAG AADGKVRFPR RPGEPDCSFY VKFGSCRFGI 120 KCKFNHPSRK KKSNRARGSG SSVSGSNSSS NKTSSPDDDQ APREEYEGLV PDISDSVSFH 180 DKGSSSNSGN HRKTSYEVID MKKGRMESKE KIAEELEKGV YFKKLDETNI TNQKILKGVK 240 DKRKETFSEG SPQEECKYYS TPGGCKFGTA CKYLHREGRE GKAEVEKVEL NFLGLPLRPG 300 EKECPFYMRT GSCKFATNCK FHHPDPSNVA SKEPVLEHEN GDNPQQNVQG PSQPSVPIWP 360 EQRALNEQHV PFLAPAPSYS AGMIPPQGMY PSPDWTGYHQ VNVPVNPYYP PGVPFPHFPA 420 PHMNHPMYKA ADIPGHQQLP SDEYPERPGQ PECQHFVKSG FCKYRMKCRF HHPRSCQPAP 480 LTGLSPIGLP IKPDQPVCTY YGRFGVCKYG PACMFNHPFN FGPPIPAAGP PLPGQYHPTP 540 GNFTV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10178 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG239900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807655.1 | 0.0 | zinc finger CCCH domain-containing protein 65-like isoform X1 | ||||
Swissprot | Q2QTY2 | 0.0 | C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | A0A2T7EFS5 | 0.0 | A0A2T7EFS5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb01040.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7928 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-56 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG239900.1.p |
Publications ? help Back to Top | |||
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