PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG236900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 333aa MW: 36682.5 Da PI: 7.5041 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.9 | 2.9e-10 | 47 | 83 | 5 | 41 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k+ rr+++NReAAr+sR+RKka+ie+Le+ +L + Pavir.3KG236900.1.p 47 KALRRLAQNREAARKSRLRKKAYIEQLENSRLKLAQL 83 788*************************954444333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.5E-8 | 38 | 89 | No hit | No description |
SMART | SM00338 | 8.7E-8 | 43 | 112 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.117 | 45 | 89 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.38E-7 | 47 | 89 | No hit | No description |
Pfam | PF00170 | 1.9E-7 | 47 | 85 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 50 | 65 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.2E-31 | 129 | 205 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MAYASPGTDT STDLDTDEKN QMLELGQLAS LAASGSGDKS KDKLGEKALR RLAQNREAAR 60 KSRLRKKAYI EQLENSRLKL AQLEQELQRA RQQGIFIPTP GDKPHSTSEN GALAFDTDYA 120 RWQEDHNKQI NELRGALNAH ASDDDLRCIV DSIMAHYCEA FRLKGVAAKA DAFHVLSGMW 180 KTPVERCFLW LGEFRPSELL KLLASRLEPL TEQQLASICN LQQSSQQAEE DLSLGVKALQ 240 QSVAETLASG SLCPAGSSGK AADSSAQMAV AIGKLGTLEN FLQEADNLRL HTLQQMQRVL 300 TTRQSARALL AISDYFSRLR ALSSLWIARP RE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG236900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807053.1 | 0.0 | transcription factor HBP-1b(c1)-like | ||||
Swissprot | Q41558 | 0.0 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | A0A2S3HAW9 | 0.0 | A0A2S3HAW9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04422.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-141 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG236900.1.p |