PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG235700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 312aa    MW: 33666.5 Da    PI: 5.3279
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG235700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC569e-186861898
                NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         ++++P  rikki++adedv +i+  +Pvl+ska elf+ +l  r++  +  +  +t+  s ++++++  +++dfl ++v +
  Pavir.3KG235700.1.p  6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLREVVSK 86
                         5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-23372IPR009072Histone-fold
SuperFamilySSF471136.86E-19489IPR009072Histone-fold
PfamPF008081.9E-16871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITIRKGVK  60
TVGSSHLKQC IQTYNVYDFL REVVSKVPDT GTSDAIVDDK LGKRRKSEDG SEEELKRTRN  120
DTESHTINGR GRGRGRGRGR RGGRGAWREA FITHEQFVEN QSSKPAGLKV EIADEVSDAT  180
EAKEATPVSS ARACLRNIDL NLDPVDEDEV TVPPQAQSSA PATNSAAANL GLTAPATSSA  240
AANLGLTAPA TSSATATAGP SVPRSKEGAK LKEFLGGWEL PDMNKMDIDP AQFALSSSHK  300
LDDDEDYDNE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-21272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129138RGRGRGRGRG
2129139RGRGRGRGRGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.424229e-53callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG235700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961646.11e-172dr1-associated corepressor isoform X2
TrEMBLA0A2T7EC611e-172A0A2T7EC61_9POAL; Uncharacterized protein
STRINGPavir.J02260.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.14e-53nuclear factor Y, subunit C11