PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG226700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 599aa    MW: 68881.6 Da    PI: 8.6581
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG226700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.71.1e-2458147190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          +fY++YAk++GF vrk +++k+ ++g+ ++++fvCskeg r+e+++  +ek +r+ + tr+gC+a++ +k+++dgk++v+++ + H+H+l
  Pavir.3KG226700.1.p  58 DFYRAYAKHMGFGVRKWTQHKN-TDGTAIWKRFVCSKEGWRKEQESGeDEKPKRKVKITRCGCEAMIGLKRRDDGKYVVATFISYHTHDL 146
                          6****************99998.8888************9999887746777888999*******************************9 PP

                 FAR1  90 a 90 
                          +
  Pavir.3KG226700.1.p 147 V 147
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.8E-2258147IPR004330FAR1 DNA binding domain
PfamPF105516.3E-21162230IPR018289MULE transposase domain
PROSITE profilePS509669.594422454IPR007527Zinc finger, SWIM-type
SMARTSM005753.5E-4429456IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MEGMSRVFNR SDSTIAIPLE GEDDTHRYSM GSVYEPDCED GLQPTVGMVF DSWEKGEDFY  60
RAYAKHMGFG VRKWTQHKNT DGTAIWKRFV CSKEGWRKEQ ESGEDEKPKR KVKITRCGCE  120
AMIGLKRRDD GKYVVATFIS YHTHDLVSPR MRHLIKSNRE VTSSCITFGA AFLPNEKKES  180
YKWLFRTFLK AMGGAAPKLI ITDEDLSMKA AIRDVFPNTI HRLCMWHILN KLPEKLGRDL  240
TKDEEFMKRF GICVWCSETP DEFESSWASI IADYGLENNV WLNDKYALRK SWIPAYFVGY  300
SLGGILRTTS RSESENAFFG RFVNWRLSLL EFWIRFEAAL EEQREKELHD DNTTILTSPV  360
LKTSWTFERH AREVYTHTIF QMFQQEVVSA RDSCVVQGLE QVGEEKITRI RDGRGRIREV  420
RYNTHSKVVN CSCKLFESIG ILCSHTIVVL KAEQYNVVPI DYILDRWTKM ATRKRVLDAN  480
GNVIEGSCTS LPPAIKIMYS ETNSKFNMGM LAAKHSGEKM KYLHRAVAEA VDHVLKMEPS  540
SETSKVSEFE SFVGMPFPTT IDIHPPEVAH TKGNGKRFQR ASEQSKSKRR TTSSKQQH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG226700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155199.11e-168protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_020155200.11e-168protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A446QG750.0A0A446QG75_TRITD; Uncharacterized protein
STRINGPavir.J07709.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-57FAR1-related sequence 5