PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG214400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 274aa    MW: 28180.4 Da    PI: 8.201
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG214400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.9e-20148182135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
  Pavir.3KG214400.1.p 148 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 182
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.6E-19142194IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.009142178IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-14144183No hitNo description
Gene3DG3DSA:3.30.50.101.5E-17146182IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.30E-14147179No hitNo description
PROSITE patternPS003440148173IPR000679Zinc finger, GATA-type
PfamPF003203.6E-18148182IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MLRHCTGSSH HQSVAAAPGT MASTTFSLFF PLPQAQWPVA DEAAAFDDDR SSITTSPSSP  60
SSASSAGSVD CTLSLGTPSS RRAAAADRAE LARRAAQPAY PFVSASPVSW DVAADQSYYC  120
CQASKPGAAK GGAVARAEHD PLLTDRRCAN CGTSSTPLWR NGPRGPKSLC NACGIRFKKE  180
ERRAAATAAM DPQGACGYAA QRAQYGYGPA AGKQAPAAAP CYGEGAFPCG GGDVADAAEA  240
PFLAWRLNVV ARAPAPATAF GVWPERAGLF QYN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG214400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9678508e-65EU967850.1 Zea mays clone 306547 GATA transcription factor 19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810273.11e-115GATA transcription factor 15-like
SwissprotB8AX512e-68GAT15_ORYSI; GATA transcription factor 15
TrEMBLA0A3L6R8D01e-119A0A3L6R8D0_PANMI; GATA transcription factor 19-like
STRINGPavir.Ca00998.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.13e-23GATA transcription factor 20