PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG212300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 251aa MW: 27119.4 Da PI: 9.4179 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.7 | 1.3e-15 | 73 | 127 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++++k+q +eLe++F++n+ ++++++e LA++l++t +qV vWF NrR + +k Pavir.3KG212300.1.p 73 QYRKLSKDQSDELEAAFQQNNFIDKRTKEALAERLKITLKQVDVWFLNRRSRLRK 127 67789***********************************************997 PP | |||||||
2 | HD-ZIP_I/II | 65.3 | 1.4e-21 | 74 | 161 | 3 | 90 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 r+lsk+q+ LE F++++ ++++ K++la++L+++ +qv+vWF nrR R +++q+E+d + k+++++l+++++rL+++ ++L+++ Pavir.3KG212300.1.p 74 YRKLSKDQSDELEAAFQQNNFIDKRTKEALAERLKITLKQVDVWFLNRRSRLRKQQVEEDLMQHKQQVEELTKQKNRLQRKIDKLKKR 161 59***********************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-18 | 55 | 125 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.24E-16 | 65 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.034 | 68 | 128 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-14 | 70 | 132 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.05E-15 | 70 | 129 | No hit | No description |
Pfam | PF00046 | 5.1E-13 | 72 | 127 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.20.5.170 | 3.7E-4 | 126 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
HNDRSFLFVS LCVHYTGGGN DGSGNENDAT ELVLVDTTNH PQHAGQEDGG VLARSGVDVE 60 GDAGGGSFVR RTQYRKLSKD QSDELEAAFQ QNNFIDKRTK EALAERLKIT LKQVDVWFLN 120 RRSRLRKQQV EEDLMQHKQQ VEELTKQKNR LQRKIDKLKK RNKELKAKLK EATTQAAPPP 180 QPSPSVMLVP LPAALNTLAG LYPAGFEGNV TDMAAAAAAA LNTQQGSAAA AALPSSSAPP 240 VPPSDGRSSI * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 126 | RRSRLRK |
2 | 120 | 127 | RRSRLRKQ |
3 | 155 | 160 | DKLKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG212300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806637.1 | 1e-104 | homeobox-leucine zipper protein HOX3-like | ||||
TrEMBL | A0A3L6RCS6 | 1e-102 | A0A3L6RCS6_PANMI; Homeobox-leucine zipper protein HOX3-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP40601 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47370.1 | 3e-16 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG212300.1.p |