PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG211000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 101aa MW: 11197.8 Da PI: 9.4241 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.8e-09 | 14 | 59 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT+ +l+ +a + + ++ +W+ Iar +g g+++++++ ++ + Pavir.3KG211000.1.p 14 QWTKKQNKLFEQALAVYDKDtpdRWHNIARAVG-GKSAEEVRRYYEM 59 7********************************.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.42 | 10 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 2.8E-8 | 11 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-7 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-8 | 14 | 67 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.45E-13 | 14 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.48E-7 | 15 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MASLSMTSSS VRAQWTKKQN KLFEQALAVY DKDTPDRWHN IARAVGGKSA EEVRRYYEML 60 EEDVKHIESG KVPLPAYRCP GGAGAGALGY EADRMKHLKI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-31 | 15 | 100 | 11 | 92 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.11239 | 1e-116 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG211000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007858 | 3e-71 | AC007858.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence. | |||
GenBank | AC120988 | 3e-71 | AC120988.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017N18, complete sequence. | |||
GenBank | AK241528 | 3e-71 | AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence. | |||
GenBank | AP014961 | 3e-71 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 3e-71 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. | |||
GenBank | CT836354 | 3e-71 | CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961116.1 | 7e-62 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 1e-34 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A3L6T7C1 | 1e-63 | A0A3L6T7C1_PANMI; Protein RADIALIS-like 3 | ||||
STRING | Pavir.J33046.1.p | 1e-69 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 9e-37 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG211000.1.p |