PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG210300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 103aa    MW: 11341.9 Da    PI: 9.4241
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG210300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-091457344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          WT+   +l+ +a + + ++   +W+ Iar +g g+++++++ ++
  Pavir.3KG210300.1.p 14 QWTKKQNKLFEQALAVYDKDtpdRWHNIARAVG-GKSAEEVRRYY 57
                         7********************************.*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.1541065IPR017884SANT domain
SMARTSM007177.3E-81163IPR001005SANT/Myb domain
PfamPF002494.1E-71357IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-71467IPR009057Homeodomain-like
SuperFamilySSF466895.38E-131468IPR009057Homeodomain-like
CDDcd001673.42E-71560No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MASLSMTSSS VRAQWTKKQN KLFEQALAVY DKDTPDRWHN IARAVGGKSA EEVRRYYELL  60
EEDVKHIESG KVPFPAYRCP GGAGAGAGAL GYEADRMKHL KI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-32151021192RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.112391e-135leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG210300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0078582e-78AC007858.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence.
GenBankAC1209882e-78AC120988.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017N18, complete sequence.
GenBankAK2415282e-78AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence.
GenBankAP0149612e-78AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-78CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8363542e-78CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961116.11e-62protein RADIALIS-like 3
SwissprotF4JVB81e-33RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A3L6T7C11e-64A0A3L6T7C1_PANMI; Protein RADIALIS-like 3
STRINGPavir.J04159.1.p5e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-26RAD-like 6
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]