PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG198600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 361aa MW: 39485.6 Da PI: 6.719 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 187 | 231 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h Er+RR+++N++f L+ +lP+a +K +Ka+iL +A +Y++ L Pavir.3KG198600.1.p 187 HVLSERKRREKLNDSFKALKAVLPPA-----PKKDKASILIRARDYVNTL 231 7789*********************9.....7**************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.00E-13 | 180 | 236 | No hit | No description |
SuperFamily | SSF47459 | 3.79E-16 | 181 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.818 | 182 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 186 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-10 | 187 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-13 | 188 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MDGGGDYPAS FCGDERSRGS ALQQEQDLPI TEEQLQQIYL LMDMEEQGHA EPPPSSQSST 60 FPAASFSASP DEASSLIMPG SSSLLDTIPN LEELIACQEG LHGRDRRRNG GHDARGAFMP 120 YSRHLSTRKR PKPGAGGAGG QRAIKAAMSA LARMHMARLA QWQRYQMEMA AAVAPPTAIS 180 SDNQLQHVLS ERKRREKLND SFKALKAVLP PAPKKDKASI LIRARDYVNT LKSRLSELEE 240 RNRRLVELMQ RQCDDGGDRD DVSDEKIEVD INRAAAADET SHEFHLKIVV RSGCNAMDAV 300 VAILECLKEL GDVRLAAADT GRRATTLALQ MKTSGCDDNF LKESVIKNVK GVMQSKIETA 360 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 195 | ERKRRE |
2 | 191 | 196 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG198600.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809512.1 | 0.0 | putative transcription factor bHLH041 isoform X1 | ||||
TrEMBL | A0A2S3H948 | 0.0 | A0A2S3H948_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00825.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 3e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG198600.1.p |