PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.3KG195400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 295aa MW: 31523.8 Da PI: 10.5005 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4.1e-15 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky Pavir.3KG195400.1.p 122 PWTEEEHRMFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 166 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.68 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 19.017 | 115 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-19 | 116 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-18 | 118 | 170 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.7E-12 | 119 | 169 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-12 | 119 | 165 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-12 | 122 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-10 | 122 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MARKCSSCGN NGHNSRTCSG HRGHGSSIST SSNSSASTSC GGLRLFGVQL QVASPPLKKC 60 LSMECLSPAA YYGAAATSSL SPSVSSSSSS LVSIEESAER VSSGYTSDGL MGRIQERKKG 120 VPWTEEEHRM FLAGLEKLGK GDWRGISRHF VTTRTPTQVA SHAQKYFLRQ NSFTQKKRRS 180 SLFDAVEGAK KVAMPRTASV SELQFPGLSP RSVDARTKGP MVLPPCLNLM SSTSPCAGGS 240 RASQQEHPSS MNLMAKPRVQ LEMPDLELKM STSRLSDQPG PSRSMPFLGT VRVT* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.869 | 0.0 | root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.3KG195400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809031.1 | 1e-177 | transcription factor MYBS3-like | ||||
TrEMBL | A0A2S3H8S6 | 1e-175 | A0A2S3H8S6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7E944 | 1e-175 | A0A2T7E944_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6T237 | 1e-175 | A0A3L6T237_PANMI; Transcription factor MYB1R1-like | ||||
STRING | Pavir.Ca00821.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4231 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56840.1 | 9e-47 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.3KG195400.1.p |