PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG194800.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 354aa    MW: 38933.4 Da    PI: 8.4996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG194800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.42.1e-30461867128
                  NAM   7 FhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                          F+P+d+el+ e+L+  ve+        +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r         
  Pavir.3KG194800.5.p  46 FDPSDQELI-EHLESLVEEGGsrahplI---NdfipTIQGDdGICYTHPENLP-GVTRNGLSKHFFHRPSKAYTTGTRKRRRiqsergsh 130
                          9********.99*****99985665442...133333655546**********.455556789******************768999999 PP

                  NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              + +++W++tgk+++v++ +g+++g+kk+Lv+y   g++ k++kt+Wvmh+y+l
  Pavir.3KG194800.5.p 131 gsedVGEARWHKTGKTRPVIV-GGRQKGCKKILVLYssYGKQGKPKKTNWVMHQYHL 186
                          988877999************.99************6558999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.84340204IPR003441NAC domain
SuperFamilySSF1019419.02E-3245204IPR003441NAC domain
PfamPF023652.1E-1246186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNRGHSGSMI SSCGTSELTD EKNKDSQTSA SRHCPSCGHS LECNPFDPSD QELIEHLESL  60
VEEGGSRAHP LINDFIPTIQ GDDGICYTHP ENLPGVTRNG LSKHFFHRPS KAYTTGTRKR  120
RRIQSERGSH GSEDVGEARW HKTGKTRPVI VGGRQKGCKK ILVLYSSYGK QGKPKKTNWV  180
MHQYHLGDQE EKDGELVVSK VFYQTQLRST TVTVEHHTRD GDEKVAEASK AMQNVLPGFT  240
ADTTAVTVAM VPQRQQKRER QPDGHCSFAP AKMSHEVGVV GGKVAGDQGE KRDNHHAPLQ  300
HNVLSDLHAK PVPTMSFHVV GTPLNTVSTA ISPEAQDRSS SRRLGADLLN WKD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117121RKRRR
2118122KRRRI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG194800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808651.10.0NAC domain-containing protein 73-like isoform X3
SwissprotQ9M0F84e-90NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2T8KI520.0A0A2T8KI52_9POAL; Uncharacterized protein
TrEMBLA0A2T8KI880.0A0A2T8KI88_9POAL; Uncharacterized protein
STRINGPavir.J36494.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-92NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]