PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG188900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 424aa    MW: 46798.2 Da    PI: 8.2
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG188900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.8e-33511971128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                          lp+G++F+P+d+el+ e+L+  ve+        +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r   
  Pavir.3KG188900.2.p  51 LPAGVKFDPSDQELI-EHLESLVEEGGsrahplI---NdfipTIQGDdGICYTHPENLP-GVTRNGLSKHFFHRPSKAYTTGTRKRRRiq 135
                          799************.99*****99985665442...133333655546**********.455556789******************768 PP

                  NAM  78 ..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                    + +++W++tgk+++v++ +g+++g+kk+Lv+y   g++ k++kt+Wvmh+y+l
  Pavir.3KG188900.2.p 136 sehgshgsedVGEARWHKTGKTRPVIV-GGRQKGCKKILVLYssYGKQGKPKKTNWVMHQYHL 197
                          999999988877999************.99************6558999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3546215IPR003441NAC domain
PROSITE profilePS5100532.05651215IPR003441NAC domain
PfamPF023653.5E-1452197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MNRGHSGSMI SSCGTSELTD EKNKDSQTSA SRHCPSCGHS LDCNPKDMIG LPAGVKFDPS  60
DQELIEHLES LVEEGGSRAH PLINDFIPTI QGDDGICYTH PENLPGVTRN GLSKHFFHRP  120
SKAYTTGTRK RRRIQSEHGS HGSEDVGEAR WHKTGKTRPV IVGGRQKGCK KILVLYSSYG  180
KQGKPKKTNW VMHQYHLGDQ EEKDGELVVS KVFYQTQLRS TTVTVEHHTR DGDEKVAETS  240
KAMQNVLPGF VADTTAVTIA MVPQQQQQQK RQRQPDGQCS FAPAKMSHEV GVVGGQVADD  300
QGEKRDNHHI PSQHNVLSDL HAKPVPTMSF HVGTPLNTVS TAISPQARDR SVVLDSRFCY  360
PAILHRNERN QEQQQKVGRR SAEMEGLIIA CQSASSTEAG ASPERPYQHN WPPDQPRSTS  420
ITM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-124919713140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128132RKRRR
2129133KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG188900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808648.10.0NAC domain-containing protein 10-like isoform X1
RefseqXP_025808649.10.0NAC domain-containing protein 10-like isoform X1
TrEMBLA0A2S3H8R70.0A0A2S3H8R7_9POAL; Uncharacterized protein
STRINGPavir.J36494.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-101NAC domain containing protein 75