PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG188200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 25062.3 Da PI: 9.2577 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.4 | 1.6e-40 | 58 | 157 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+k+l +++e++r d+++slvyeA+ r+rdPvyG++g il+lqqq++ l Pavir.3KG188200.1.p 58 PCAACKLLRRRCAQECPFSPYFSPLEPHKFAAVHKVFGASNVSKMLLEVHESQRADTANSLVYEANLRLRDPVYGCMGAILTLQQQVQAL 147 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +aela++++e Pavir.3KG188200.1.p 148 EAELATVRAE 157 ******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.237 | 57 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-40 | 58 | 155 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSTASEWPDH ELGKKFKRES AAADRMTAAR RSCSLPAGAG ATAAAGAGPG SALNTVTPCA 60 ACKLLRRRCA QECPFSPYFS PLEPHKFAAV HKVFGASNVS KMLLEVHESQ RADTANSLVY 120 EANLRLRDPV YGCMGAILTL QQQVQALEAE LATVRAEIVR HRYRPAAAAA ASPVATVLPS 180 SHASQLLAAS RGLHAGRPVG TRTATLAAAS SSSSSVVYAA AASSSTDYSS VTNENVPYFG 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-38 | 58 | 161 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-38 | 58 | 161 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.13994 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG188200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095831 | 1e-130 | FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977134.1 | 1e-117 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 9e-69 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A3L6SWK5 | 1e-120 | A0A3L6SWK5_PANMI; LOB domain-containing protein 15-like | ||||
STRING | Pavir.J00291.1.p | 1e-173 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-59 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG188200.1.p |
Publications ? help Back to Top | |||
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