PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG185200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 264aa    MW: 28456.5 Da    PI: 10.2385
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG185200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.4e-1169114454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h+e+ErrRR+riN  ++ Lr+++P a     + ++Ka+ L ++v  +k+L
  Pavir.3KG185200.3.p  69 VHSEAERRRRERINAHLAALRRMVPDA-----RQMDKATLLARVVCQLKDL 114
                          59************************9.....7899999999999887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.41865114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1269126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-1269122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-869114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-1071120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.9E-5157204No hitNo description
CDDcd048731.29E-10157223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAAASACQPF QEGKQHLPLH HSGSALPPVN RGTVLPLRQA TSVPPPAARE PPPPPSSGRS  60
ATEVRALKVH SEAERRRRER INAHLAALRR MVPDARQMDK ATLLARVVCQ LKDLKRKAAE  120
TRQPLPIPAE ANGITVDCYT GAAAGGYGRP ETCIRASVSC DDRPGLLADL AGAFRGLRLR  180
PMRADMASLG GRARCEFMLC REEGDVVSAG RVKALEDGVR QALASAAYPE SAYGCNYRSR  240
RRRILESHYA LGHELGVGDH HGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG185200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809242.11e-151transcription factor bHLH51-like
TrEMBLA0A2T7E8P11e-152A0A2T7E8P1_9POAL; Uncharacterized protein
STRINGPavir.Ca01107.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.11e-27basic helix-loop-helix 32