PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG185200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 288aa    MW: 30988.3 Da    PI: 10.0918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG185200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.6e-1193138454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h+e+ErrRR+riN  ++ Lr+++P a     + ++Ka+ L ++v  +k+L
  Pavir.3KG185200.2.p  93 VHSEAERRRRERINAHLAALRRMVPDA-----RQMDKATLLARVVCQLKDL 138
                          59************************9.....7899999999999877777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.41889138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-1293146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1293150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-893138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-1095144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.26E-10181247No hitNo description
Gene3DG3DSA:3.30.70.2605.6E-5181228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGSTAFSRSF RGFTCEIGHG GSEQMAAASA CQPFQEGKQH LPLHHSGSAL PPVNRGTVLP  60
LRQATSVPPP AAREPPPPPS SGRSATEVRA LKVHSEAERR RRERINAHLA ALRRMVPDAR  120
QMDKATLLAR VVCQLKDLKR KAAETRQPLP IPAEANGITV DCYTGAAAGG YGRPETCIRA  180
SVSCDDRPGL LADLAGAFRG LRLRPMRADM ASLGGRARCE FMLCREEGDV VSAGRVKALE  240
DGVRQALASA AYPESAYGCN YRSRRRRILE SHYALGHELG VGDHHGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG185200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809242.11e-150transcription factor bHLH51-like
TrEMBLA0A2T7E8P11e-152A0A2T7E8P1_9POAL; Uncharacterized protein
STRINGPavir.Ca01107.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.12e-27basic helix-loop-helix 32