PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG185200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 312aa MW: 33577.3 Da PI: 9.4773 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33 | 1.1e-10 | 117 | 162 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN ++ Lr+++P a + ++Ka+ L ++v +k+L Pavir.3KG185200.1.p 117 VHSEAERRRRERINAHLAALRRMVPDA-----RQMDKATLLARVVCQLKDL 162 59************************9.....7899999999999877777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.418 | 113 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-11 | 117 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-12 | 117 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-8 | 117 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-10 | 119 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.22E-10 | 205 | 271 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 6.4E-5 | 205 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MVEVTVLYPS ISIHPGNYVV VPAAYHSSCS SHSFRGFTCE IGHGGSEQMA AASACQPFQE 60 GKQHLPLHHS GSALPPVNRG TVLPLRQATS VPPPAAREPP PPPSSGRSAT EVRALKVHSE 120 AERRRRERIN AHLAALRRMV PDARQMDKAT LLARVVCQLK DLKRKAAETR QPLPIPAEAN 180 GITVDCYTGA AAGGYGRPET CIRASVSCDD RPGLLADLAG AFRGLRLRPM RADMASLGGR 240 ARCEFMLCRE EGDVVSAGRV KALEDGVRQA LASAAYPESA YGCNYRSRRR RILESHYALG 300 HELGVGDHHG R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 126 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG185200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809242.1 | 1e-150 | transcription factor bHLH51-like | ||||
TrEMBL | A0A2T7E8P1 | 1e-151 | A0A2T7E8P1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca01107.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3347 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 3e-27 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG185200.1.p |