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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.3KG168900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GRAS |
Protein Properties |
Length: 486aa MW: 55900.9 Da PI: 9.4625 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG168900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 279.4 | 1.1e-85 | 110 | 479 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
+ L++cA+av+++++ +a +lL++++++a+++gd++qRla++f+++L+arl++++s++ + +++ s +e l+a++l ++ + k
Pavir.3KG168900.1.p 110 TILIHCAQAVAANNHMRAGELLKQIKKHATETGDATQRLAQCFAKGLEARLVGMGSKVWQLRMAERLS---IVEILKAHNLCMAACSFNK 196
679**************************************************999998765555555...9****************** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
+ l +Il+a+ g++r Hi+D+++ G++W+ Ll+ a R++gpp+++iT++g p+ e++eet++rL+k A+e+gvpf+f++
Pavir.3KG168900.1.p 197 VMLLFSTMTILQAMVGKRRPHIVDYGMHCGFHWAELLRLRARREGGPPKVKITAIGYPHLRpcPIEQIEETRRRLSKCAHEFGVPFNFHA 286
*********************************************************9988999************************** PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
+ k++e++++e+L+ + +++l+Vn +++ +l+des ++ ++d+vL+ +++++P+v++ + ++++ ++s+l rf eal+yy+a+f
Pavir.3KG168900.1.p 287 -IRKKWEEVRIENLDKDVEDVLIVNDHFSFNTLMDESIFFDDpsPKDTVLQNIRKMRPDVFIQSILNSSY-GSSYLSRFREALSYYTAMF 374
.7***********************************97776669************************9.6789*************** PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
d ++a +pres+ r+++E+ ++gr + n++ cega+ er e++++W++r ++aG++++pl+ +++ k +++ + + e+ ++l
Pavir.3KG168900.1.p 375 DIFDAIIPRESKSRVVLEQDIFGRFALNIIPCEGADLMERPEKYKQWQARNQRAGLRQLPLKPAIVNVLKDKAMRCHHKDFLFCEDGQWL 464
*****************************************************************************888********** PP
GRAS 359 vlgWkdrpLvsvSaW 373
++gW++r L + SaW
Pavir.3KG168900.1.p 465 LQGWMGRILCAQSAW 479
*************** PP
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Sequence ? help Back to Top |
Protein Sequence Length: 486 aa
Download sequence Send
to blast |
MLLPRGNGFG RGELVNQMVR ESNSHIRAKK RYASDDHLEE VRRTSKSMMM IKEPKDICAR 60 EMWDDIMSNG YETYIVRGME QLRSAMANKV EKNSRKDSRK VVANVVDIHT ILIHCAQAVA 120 ANNHMRAGEL LKQIKKHATE TGDATQRLAQ CFAKGLEARL VGMGSKVWQL RMAERLSIVE 180 ILKAHNLCMA ACSFNKVMLL FSTMTILQAM VGKRRPHIVD YGMHCGFHWA ELLRLRARRE 240 GGPPKVKITA IGYPHLRPCP IEQIEETRRR LSKCAHEFGV PFNFHAIRKK WEEVRIENLD 300 KDVEDVLIVN DHFSFNTLMD ESIFFDDPSP KDTVLQNIRK MRPDVFIQSI LNSSYGSSYL 360 SRFREALSYY TAMFDIFDAI IPRESKSRVV LEQDIFGRFA LNIIPCEGAD LMERPEKYKQ 420 WQARNQRAGL RQLPLKPAIV NVLKDKAMRC HHKDFLFCED GQWLLQGWMG RILCAQSAWV 480 AEDAS*
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