PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG142300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 304aa    MW: 33984.9 Da    PI: 9.8918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG142300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-12141185347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           WT+ E+ +++++   +G g+Wk I+r++ ++Rt+ q+ s+ qky
  Pavir.3KG142300.1.p 141 IWTKHEHRQFLCGLCVYGRGDWKNISRHFVTTRTPVQVSSHAQKY 185
                          5*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-9132188IPR009057Homeodomain-like
PROSITE profilePS5129414.94134190IPR017930Myb domain
SuperFamilySSF466891.72E-16136191IPR009057Homeodomain-like
SMARTSM007173.5E-10138188IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.2E-12141188IPR006447Myb domain, plants
PfamPF002498.3E-9142185IPR001005SANT/Myb domain
CDDcd001672.26E-8142186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDPKFNGEWS ASEIRMAKSL IASHNASNNS ANDMNKKHNN IVNQLQAWFP SKERHQVVKL  60
YVELVVEMMR QPGQSGNQSM VANNLVNHNY GIPVEDPTMN NMNMPLASLT GKKSEATRVV  120
EEAPQRQVII PQQERRQKGG IWTKHEHRQF LCGLCVYGRG DWKNISRHFV TTRTPVQVSS  180
HAQKYFRRLE RTNEKQRHSI NDIGLYDEPR ALNNNSSGWK PLTFSGVNNP NGYGSISSKL  240
PTMNNLGHTW SSPFLYSDGQ ASSSQATTWT GQQLGASSST ALAPEGAGNQ MAWTGDQQGY  300
FYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG142300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806560.11e-155transcription factor SRM1-like
TrEMBLA0A2S3H8110.0A0A2S3H811_9POAL; Uncharacterized protein
TrEMBLA0A2T7E8370.0A0A2T7E837_9POAL; Uncharacterized protein
STRINGPavir.Ca01208.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-24MYB family protein