PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.3KG142100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 225aa MW: 25511.5 Da PI: 9.8406 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.4e-09 | 115 | 151 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++ +++G g+Wk I+r++ +++t+ q+ s+ qky Pavir.3KG142100.1.p 115 QFLRGLHMYGRGDWKNISRHFVTTKTPVQVSSHAQKY 151 79**********************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0072 | 101 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-6 | 110 | 156 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.98E-11 | 113 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.4E-10 | 113 | 154 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 2.12E-6 | 114 | 152 | No hit | No description |
Pfam | PF00249 | 1.4E-6 | 115 | 151 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MPTTTIYADD TNQKHNSIVN QLQAWFPLKE KRQVVKLYVE LVVEMTMREG QIGNQSGNSL 60 VNNNYGIPRE DPTMDNMDMS PGSLKGKQSE APRMVEEAPQ QQVTIPHQER RHKRQFLRGL 120 HMYGRGDWKN ISRHFVTTKT PVQVSSHAQK YFRRVERTTE KQRYSINDDI GLNDAKPWVH 180 NSSSSQEALA FAGGAYNPNG HGSSSQFATM NNLAQAWSPF LYSA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.3KG142100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959144.1 | 9e-87 | transcription factor SRM1 | ||||
Refseq | XP_025806559.1 | 5e-88 | myb-like protein I | ||||
TrEMBL | A0A3L6SUI2 | 1e-117 | A0A3L6SUI2_PANMI; Protein REVEILLE 4-like | ||||
STRING | Pavir.Ca01211.1.p | 1e-141 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38090.1 | 5e-21 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.3KG142100.1.p |