PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG142000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 181aa MW: 20392.8 Da PI: 10.1779 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 3.9e-14 | 19 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ WT eE+ +++++ +++G g+Wk I+r++ +++t+ q+ s+ qky Pavir.3KG142000.1.p 19 RLLWTIEEHRQFLHGLQMYGRGNWKNISRHFVTTKTPVQVSSHAQKY 65 677*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-11 | 12 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.987 | 14 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.66E-17 | 16 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-10 | 18 | 68 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 5.5E-15 | 18 | 68 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.7E-11 | 21 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-9 | 22 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MVEEVSQVVI PQQERRHKRL LWTIEEHRQF LHGLQMYGRG NWKNISRHFV TTKTPVQVSS 60 HAQKYFRRVE RTTEKQRYSI NDVGLYDAEP LAQNNSSSLE ALSFAGGANN QNNYGSGSYL 120 ATMNNLAQIW SPFLYRTAQA SSSQATIRIW TGQQMGSSPS ATLAPEGPKI QMAWIGNSNM 180 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG142000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806558.1 | 3e-82 | uncharacterized protein LOC112885100 | ||||
TrEMBL | A0A3L6SYG9 | 1e-100 | A0A3L6SYG9_PANMI; Protein REVEILLE 4-like | ||||
STRING | Pavir.Ca01212.1.p | 1e-132 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 2e-24 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG142000.1.p |