PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG139200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 431aa    MW: 47429.8 Da    PI: 6.6412
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG139200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
  Pavir.3KG139200.3.p 14 KGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                         678*******************************************97 PP
2Myb_DNA-binding47.73.7e-1567110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++++eE++l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  Pavir.3KG139200.3.p  67 RGAFSQEEEDLIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                          89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.6961IPR017930Myb domain
SuperFamilySSF466891.98E-2912108IPR009057Homeodomain-like
SMARTSM007175.0E-121363IPR001005SANT/Myb domain
PfamPF002493.4E-151461IPR001005SANT/Myb domain
CDDcd001672.80E-111761No hitNo description
PROSITE profilePS5129425.4562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2565116IPR009057Homeodomain-like
SMARTSM007179.8E-1366114IPR001005SANT/Myb domain
PfamPF002491.2E-1367110IPR001005SANT/Myb domain
CDDcd001671.14E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG  120
IDPNTHKPLA EADRNGAAPT ISTERTSGSS DVNPSSTGAL GNLSHLLSET AQSSMLLPVY  180
DKNQSEAPHL ARPKVPPKEL FLDQLTTGHK SPSTCRSSGQ TLYFPFQQPL GYSSESGSGD  240
GASMNSLWFN QNDFNCSTIS TVMPPVSPSA LSTSMGLNLP PDNPRHGGTG IGSASVDSFY  300
WDGTNPSSSS STGSRGSNSL GFEPQSTSSI LENSVFPWTD IAQEKDTRAH LGEELKWPDL  360
LHGTFAETTI AMQNQSQSLY DDVIKAESQF SMDGMCASWY QNQQPQQQLQ AAPDMYDKDL  420
QRMQVSFENI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.155900.0leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG139200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0357510.0BT035751.1 Zea mays full-length cDNA clone ZM_BFb0081N12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960435.10.0transcription factor MYB61 isoform X1
TrEMBLA0A2S3H7W20.0A0A2S3H7W2_9POAL; Uncharacterized protein
STRINGPavir.J31344.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-90myb domain protein 61