PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG139000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 494aa MW: 51299.4 Da PI: 6.9116 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.2 | 2.3e-16 | 306 | 352 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq Pavir.3KG139000.1.p 306 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 352 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.33E-18 | 298 | 356 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-20 | 299 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-21 | 299 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.006 | 302 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.6E-14 | 306 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-17 | 308 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MTGPGDELAE LLWDNGPALR RAPPPFQPFT CSAAGSSRAH ELKRHAAAGG MAPVPLGLHG 60 AGGLPDEDAV PWLHCPVAVD VSDADTAPLP PEYCAGLLSE YSGLQPAPPA AVPASRAAPR 120 EAAAKQATLP GAASGAGEGV MNFTFFSRPL QRPQASAAAA ASNPVESTVV QAATNRLRAT 180 PLFSEQRMAW LQPPKGPRAA APGAAPAPAP QAPLPTEHRL HGEAATVTQC RLQPEARAPD 240 AAAATAVVTT SSVCSGNGDR SQQPKRSSSH QVADCSVSPD EDLDDEGGAM RRSAARSNKR 300 SRTAEVHNLS ERRRRDRINE KMRALQELIP NCNKIDKASM LEEAIEYLKT LQLQVQMMSM 360 GTGLCVPPML LPAMQVPVPH PMAHFPHLGM GLGFGMGAAA AAAFDMARAA GAHFPCPPMP 420 MPPGPMFGVP GQAMPSPAAA AWAHMAGSGT TPAEHIEAAA APPAREEAEP LPPPVPVVTQ 480 GDQIQKLQHP KQT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 310 | 315 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}. | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG139000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805180.1 | 0.0 | transcription factor APG-like | ||||
Swissprot | Q0JNI9 | 8e-86 | PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
Swissprot | Q6AT90 | 2e-87 | APG_ORYSJ; Transcription factor APG | ||||
TrEMBL | A0A3L6RF20 | 0.0 | A0A3L6RF20_PANMI; Transcription factor APG-like | ||||
STRING | Pavir.Ca01237.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 6e-33 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG139000.1.p |
Publications ? help Back to Top | |||
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