PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG138700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 386aa    MW: 40277.9 Da    PI: 5.7376
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG138700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.2e-14184229555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR++iN+++ eL +++P +     kK++Ka+iL  A +Y+k+Lq
  Pavir.3KG138700.1.p 184 HIIAERKRREKINKRLIELSTVIPDL-----KKMDKATILFDAAKYVKELQ 229
                          889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.856179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16184243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16184241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11184229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.30E-15184233No hitNo description
SMARTSM003536.5E-14185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEDSSLFMQW AIDTLLNEHP EPAIVGDGCG EATFPSLQAL RDASHAVEMV RELTADEAHH  60
DAANSWSSGD GDITDGSGGG GTTVRAPAAA RDGHGSWPQS PSSFRRAPPR SGNTNNLPLV  120
SWNFVTGSAQ PAGSGGMVVE EAAAPPPRSF PEPAHHGHGS PPPTGRASLR SQGAASSASY  180
APDHIIAERK RREKINKRLI ELSTVIPDLK KMDKATILFD AAKYVKELQQ RLKALEEEAT  240
AAGSNARSNE TVVRVKKPCN AAVAAPDENG SPSSAASASG PPATGKPAAL PEIQARFSEK  300
SAMVRIHCGG GKGVAVTVLA EVEDLGLSIV HANVMPFSAC TVIITITAKV EEGFTITAEE  360
IVDRLNSALS HQHINCNGGT EETEN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192ERKRRE
2188193RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG138700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806554.10.0transcription factor bHLH18-like
TrEMBLA0A2S3H7V20.0A0A2S3H7V2_9POAL; Uncharacterized protein
STRINGPavir.Ca01239.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-35bHLH family protein