PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG136500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 120aa MW: 12915.6 Da PI: 7.8205 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 23.7 | 6.9e-08 | 20 | 34 | 21 | 35 |
GATA 21 tLCnaCGlyyrkkgl 35 +LCnaCG++y+k+++ Pavir.3KG136500.1.p 20 SLCNACGIRYKKEER 34 5***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 6.9E-5 | 19 | 34 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MHARREFDLT EFPFAVPSQS LCNACGIRYK KEERRAAAAV APAPAPQEYA CGGYARQQPP 60 QPQWGCYGAA AAKSASFGMY GGDVVDAAAD GPCLSWMLNV MPSSPAFAVR ERPTLFQYY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG136500.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681231.1 | 2e-47 | GATA transcription factor 15 | ||||
TrEMBL | A0A1E5WAB7 | 3e-48 | A0A1E5WAB7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J26908.1.p | 3e-51 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG136500.1.p |