PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG134900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 226aa MW: 26468.2 Da PI: 5.1933 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 199 | 3e-61 | 3 | 217 | 159 | 374 |
GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248 +tg+rL+++Ae ++vpf+++ +a+r+e++ +e+L+++++E+l+Vn+++q ++l de+ +++s+rd+vL+++k+++P+v+++ + + Pavir.3KG134900.1.p 3 DATGKRLTEYAEMFHVPFQYQG-IASRWENICTEDLNIDKDEVLIVNCMYQTKYLGDETEDIDSARDRVLRIMKKINPEVFILGIINGFY 91 689*******************.7****************************************************************** PP GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 ns+ Fl rf e l +ys+lfd++++ +++++e+ri +Er llg ++ nvvacegaer+er et+++W++r +aGFk++p+++ + k Pavir.3KG134900.1.p 92 NSPFFLPRFREVLFHYSSLFDMYNTIVAQNDEARILIERDLLGTDVLNVVACEGAERIERPETYKQWQARSLKAGFKQLPVNQAILKRSI 181 *************************************************************************************99887 PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k + d + ++e++g+l++gWk+r +++vS+W+ Pavir.3KG134900.1.p 182 DEKKKNYHDDFVINEDNGWLLQGWKGRIMYAVSSWK 217 7777777788*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 32.824 | 1 | 197 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-58 | 3 | 217 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MIDATGKRLT EYAEMFHVPF QYQGIASRWE NICTEDLNID KDEVLIVNCM YQTKYLGDET 60 EDIDSARDRV LRIMKKINPE VFILGIINGF YNSPFFLPRF REVLFHYSSL FDMYNTIVAQ 120 NDEARILIER DLLGTDVLNV VACEGAERIE RPETYKQWQA RSLKAGFKQL PVNQAILKRS 180 IDEKKKNYHD DFVINEDNGW LLQGWKGRIM YAVSSWKPKE QYSNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-24 | 2 | 219 | 172 | 381 | Protein SCARECROW |
5b3h_A | 5e-24 | 2 | 219 | 171 | 380 | Protein SCARECROW |
5b3h_D | 5e-24 | 2 | 219 | 171 | 380 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG134900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805228.1 | 1e-159 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 4e-86 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A2T7E742 | 1e-156 | A0A2T7E742_9POAL; Uncharacterized protein | ||||
STRING | Si024734m | 1e-135 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 2e-88 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG134900.1.p |